Just going to put this here for anybody that sees it. Seems I had two issues. One is that I has a corsair block going to the adapter to the splitter with my panel. That seems to be the primary culprit but I also had something weird going on with my motherboard and the cpu block.
I was starting some 3d mark runs overclocking the GPU only. Went to overclock the CPU and the board seemed borked up. Started digging and found that I was not showing channel A memory at all. I have 2 16GB sticks there. I know that since x99 these boards like to drop channels when the cooler is too tight. So I loosened the thumb screws on the block a full turn on each and got my memory to all show and all my LEDs work except the gpu block.
So anyhow, everything is functioning except the GPU block which I will troubleshoot now.