I finally have my computer up and running. Everything is going well, stick with stock settings at the moment (to much time invested in other boards that I needed to just get up and running for now.) Ended up using the Windows 8.1 preview, and pretty impressed so far, boots quite nicely.
That, is, until I connected my HDD. I have 3 SSD drives (Samsung 840 Pro, 256GB with OS and 128GB with files both on Intel SATA3 ports, and 128GB scratch/misc on Inte SATA2 port (avoiding ASM ports so I could disable them and skip the bootup time). I went to connect my 1 TB Seagate Barracuda LP to use as a backup drive to one of the Intel SATA2 ports and my boot time jumped to 6 MINUTES! Unplug it, back down to 30 seconds (full reboot to fully loaded in Windows, including PIN entry).
If I plug the same drive in to an external USB port using a external drive bay it works fine.
Specs are as in my signature, only thing to note is I do have the Obsidian 800D case, with all the drives in the hot swap bays.
Any suggestions are appreciated.
Thanks!
CPU: Intel i7 3970X
Mobo: Rampage IV Extreme
Memory: 32GB (4x8GB) G.Skill RipjawsX 2133MHz
GPU: Sapphire HD 7990 6GB
Cooling: Dual Loop Custom Cooling
Koolance Dual Bay Resevoir with 2 Swiftec MCP655-PWM pumps in parallel
Loop 1: CPU Dedicated with Triple Rad Alphacool UT60 Push/Pull
Loop 2: GPU Dedicated with Dual Rad Alphacool UT60
PSU: OCZ ZX 1250 Watt
Case: Corsair Obsidian 800D