Asus and Gigabyte use entirely different VRMs on their motherboards, different hardware components, different logic controllers, different firmcode and different BIOS programs which make it all run. Different motherboards will often produce results on hard overclocking. Your tests appear to indicate the Z97-E has finer voltage and current regulation than the Z97X-G7 under stress loads.
You've reinstalled and repasted the cooler (and processor? and DIMMs?) several times, which largely rules out mounting variances. But performance at the extremes can vary significantly from install to install, the timings and voltages are so tight that trivial quirks all add up into noticeable variations at maximal performance thresholds.
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[/Korth]