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Maximus VI Gene: PCIE2.0 GPU not detected

dentedcapacitor
Level 7
I am currently troubleshooting my board (BIOS 1603) for other issues right now. One of them is testing the PCIE_X16/X8_1 slot, my GTX980 can post no problems at all but it is running at x8 not x16. I tried my older GTX550Ti and a spare 8400GS, both PCIE2.0x16 cards will not be detected by the board. It immediately boots using the IGP on the 4790k instead, using the integrated graphics the BIOS shows that there is no card connected, tried selecting Gen2 instead of Auto in Advanced > System Agent Configuration > NB PCIe Configuration or selecting primary display of PCIE instead of IGP and it still won't work. Tried the PCIE2.0 cards in PCIE_X8_2 slot and same thing. What is going on?
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