Hey Starkey
Please do this for me.
Remove your motherboard from the case.
Strip the motherboard
This includes the CPU and the battery.
Now clear CMOS
I would use the box as a test bench, and ensure that no power sources are still connected.
leave for a few hours and then build up with CPU, cooler and one stick or ram.
Use the onboard video and only have keyboard and mouse connected - no HDD for now.
Power up and go into bios and check which version is running. I think your first flash did not go to well. Some of the time it will sit at one code for more than 10 minutes mate as it updates the firmware. So just let it be do not power off or clear cmos during the process.
To help us help you - please provide as much information about your system and the problem as possible.