There is much information missing in order to give you proper advice. However, a summary of controllers in respect to cooling fans may assist.
You can either use software or hardware. If you use Fan Xpert 2, (it will come with MVF), you will get a very good controller that will adjust the speed of one set of PWM fans (let's say the ones on your rad), and the ability to control all others by reducing or raising the voltage (so not PWM type control).
Even though looking at page 1-41 of the MVF manual will clearly show you that each fan outlet has a classic PWM 4 pin description, Asus has not incorporated a PWM choice for each outlet when using Fan Xpert 2, even though the Super IO chip they use has the capability.
It is possible to use fan control in the BIOS alone, however, the control there is , in my opinion, rudimentary and certainly not sufficiently complete for water cooling systems.
There does not exist...at this point in time...any controller in the market place that has the ability to control multi PWM fans and/or waterpumps and give a wide range of control.
Be very wary of such advertisements saying otherwise. eg Corsair's webpage under Corsair/products/Corsair Link/Corsair Link Cooling Node......where they state, "Corsair Link Cooling Node gives you desktop control of up to five PWM or DC case fans". That is just not the case and is a blatent misrepresentation, and even though this has been brought to their attention, they continue to peddle such misrepresentation. There is a thread in their forum about this.
For a full PWM controller, the only choice at this instant in time is a self built one, and if you have a small ability in soldering a simple electronics, such a controller and all the assistance you need can be found on this thread:
http://www.overclockers.com/forums/showthread.php?t=641111But let's turn to your specific situation. You mention that you intend to change the standard fans of the H100 and use Artic Cooling, and you also mention that your fans are PWM. I don't quite know whether you mean the Artic Cooling fans or all of the fans you intend to use in the whole system are PWM. Assuming you meant the Artic Cooling fans, I note that there are three fans that Artic Cooling put out that are PWM, and they range from 120 x 25 to 120 x 35. Assuming again...that you are using 4 F12 fans......the other thing you must do is work out the total power required to run them. Each F12 would require a max of 0.15 amps, so it is possible to run 4 via your CPU_FAN outlet, as the MVF CPU_FAN outlet can handle up to 1 amp. (I would still bring 12v and earth straight from the PSU, as I personally try to remove as much power from the MB as possible).
The rest of your fans (again this is assuming that you have not changed them) are the fans that came with the Antec 902. All fans used in the 902 are non PWM type. They have some control for their speed provided, and without running your system, it will be difficult to assess it's abilities. Best wait till then. So to get you up and running, the best advice would be to use Fan Xpert 2.....use your CPU_FAN outlet PWM signal to control the speed of your four PWM rad fans.......and the remaining case fans. Then see how the system is behaving temp wise....and make any other decisions at that time.
Just finishing TJ 11 WC.. trying to control cooling via total PWM
Asus Max V Extreme
Intel 3770K
Corsair 16gig Platinum 1866
2 X GTX 690 (EVGA) with aftermarket EVGA water blocks and backplates
Samsung 830 Series 512GB + 3 WD mechanical HD's
Swiftech Apogee Drive II
Swiftech MCP35X2
Alphacool NexXxos UT60's quad, triple and single 120's
Rad fans 11 x NF-F12 PWM
Corsair 1200i PSU
Swiftech Maelstrom
AFT Pro-57U card reader